Index
_
|
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
U
|
V
|
W
_
__init__() (EMaligner.transform.affine_model.AlignerAffineModel method)
(EMaligner.transform.polynomial_model.AlignerPolynomial2DTransform method)
(EMaligner.transform.rotation_model.AlignerRotationModel method)
(EMaligner.transform.similarity_model.AlignerSimilarityModel method)
(EMaligner.transform.thinplatespline_model.AlignerThinPlateSplineTransform method)
(EMaligner.transform.transform.AlignerTransform method)
(EMaligner.transform.translation_model.AlignerTranslationModel method)
A
aff_matrix() (in module EMaligner.transform.utils)
AlignerAffineModel (class in EMaligner.transform.affine_model)
AlignerPolynomial2DTransform (class in EMaligner.transform.polynomial_model)
AlignerRotationModel (class in EMaligner.transform.rotation_model)
AlignerSimilarityModel (class in EMaligner.transform.similarity_model)
AlignerThinPlateSplineTransform (class in EMaligner.transform.thinplatespline_model)
AlignerTransform (class in EMaligner.transform.transform)
AlignerTransformException
AlignerTranslationModel (class in EMaligner.transform.translation_model)
assemble_and_solve() (EMaligner.EMaligner.EMaligner method)
assemble_from_db() (EMaligner.EMaligner.EMaligner method)
assemble_from_hdf5() (EMaligner.EMaligner.EMaligner method)
B
block_from_pts() (EMaligner.transform.affine_model.AlignerAffineModel method)
(EMaligner.transform.polynomial_model.AlignerPolynomial2DTransform method)
(EMaligner.transform.rotation_model.AlignerRotationModel method)
(EMaligner.transform.similarity_model.AlignerSimilarityModel method)
(EMaligner.transform.thinplatespline_model.AlignerThinPlateSplineTransform method)
(EMaligner.transform.translation_model.AlignerTranslationModel method)
blocks_from_tilespec_pair() (in module EMaligner.utils)
C
calculate_processing_chunk() (in module EMaligner.EMaligner)
check_explicit() (EMaligner.schemas.matrix_assembly method)
concatenate_results() (in module EMaligner.utils)
CopyDataSetstoSolutionOut (C++ function)
CountFiles (C++ function)
CountSolves (C++ function)
create_CSR_A() (EMaligner.EMaligner.EMaligner method)
create_or_set_loading() (in module EMaligner.utils)
CreateL (C++ function)
CreateW (C++ function)
D
default_schema (EMaligner.EMaligner.EMaligner attribute)
determine_zvalue_pairs() (in module EMaligner.utils)
disp_node (C++ function)
dump() (in module EMaligner.jsongz)
E
EMA_PlotSchema (class in EMaligner.schemas)
EMA_Schema (class in EMaligner.schemas)
EMaligner (class in EMaligner.EMaligner)
EMaligner.EMaligner (module)
EMaligner.jsongz (module)
EMaligner.schemas (module)
EMaligner.transform.utils (module)
EMaligner.utils (module)
EMalignerException
F
freenode (C++ function)
from_solve_vec() (EMaligner.transform.affine_model.AlignerAffineModel method)
(EMaligner.transform.polynomial_model.AlignerPolynomial2DTransform method)
(EMaligner.transform.rotation_model.AlignerRotationModel method)
(EMaligner.transform.similarity_model.AlignerSimilarityModel method)
(EMaligner.transform.thinplatespline_model.AlignerThinPlateSplineTransform method)
(EMaligner.transform.translation_model.AlignerTranslationModel method)
G
get_matches() (in module EMaligner.utils)
get_resolved_from_z() (in module EMaligner.utils)
get_resolved_tilespecs() (in module EMaligner.utils)
get_stderr_stdout() (in module EMaligner.utils)
get_z_values_for_stack() (in module EMaligner.utils)
GetGlobalLocalCounts (C++ function)
H
hdf5_options (class in EMaligner.schemas)
hw_config (C++ function)
I
index_rank (C++ function)
input_stack (class in EMaligner.schemas)
L
load() (in module EMaligner.jsongz)
M
make_dbconnection() (in module EMaligner.utils)
matrix_assembly (class in EMaligner.schemas)
message_from_solve_results() (in module EMaligner.utils)
N
node (C++ class)
node::files (C++ member)
node::mem (C++ member)
node::name (C++ member)
node::nfiles (C++ member)
node::nrank (C++ member)
node::ranks (C++ member)
node::tmem (C++ member)
O
opts (EMaligner.schemas.EMA_PlotSchema attribute)
(EMaligner.schemas.EMA_Schema attribute)
(EMaligner.schemas.hdf5_options attribute)
(EMaligner.schemas.input_stack attribute)
(EMaligner.schemas.matrix_assembly attribute)
(EMaligner.schemas.output_stack attribute)
(EMaligner.schemas.pointmatch attribute)
(EMaligner.schemas.regularization attribute)
output_stack (class in EMaligner.schemas)
P
pointmatch (class in EMaligner.schemas)
preprocess() (EMaligner.transform.rotation_model.AlignerRotationModel static method)
R
ReadIndexSet (C++ function)
ReadLocalCSR (C++ function)
ReadMetadata (C++ function)
ReadVec (C++ function)
ReadVecWithSizes (C++ function)
Readx0 (C++ function)
ready_transforms() (in module EMaligner.utils)
regularization (class in EMaligner.schemas)
regularization() (EMaligner.transform.affine_model.AlignerAffineModel method)
(EMaligner.transform.polynomial_model.AlignerPolynomial2DTransform method)
(EMaligner.transform.rotation_model.AlignerRotationModel method)
(EMaligner.transform.similarity_model.AlignerSimilarityModel method)
(EMaligner.transform.thinplatespline_model.AlignerThinPlateSplineTransform method)
(EMaligner.transform.translation_model.AlignerTranslationModel method)
run() (EMaligner.EMaligner.EMaligner method)
S
scale (EMaligner.transform.thinplatespline_model.AlignerThinPlateSplineTransform attribute)
set_complete() (in module EMaligner.utils)
SetFiles (C++ function)
ShowMatInfo (C++ function)
solve() (in module EMaligner.utils)
solve_or_not() (EMaligner.EMaligner.EMaligner method)
split_files (C++ function)
T
tilepair_weight() (in module EMaligner.EMaligner)
to_solve_vec() (EMaligner.transform.affine_model.AlignerAffineModel method)
(EMaligner.transform.polynomial_model.AlignerPolynomial2DTransform method)
(EMaligner.transform.rotation_model.AlignerRotationModel method)
(EMaligner.transform.similarity_model.AlignerSimilarityModel method)
(EMaligner.transform.thinplatespline_model.AlignerThinPlateSplineTransform method)
(EMaligner.transform.translation_model.AlignerTranslationModel method)
tolist() (EMaligner.schemas.matrix_assembly method)
transform_match() (in module EMaligner.utils)
U
unique_str (C++ function)
update_tilespecs() (in module EMaligner.utils)
V
validate_data() (EMaligner.schemas.EMA_Schema method)
(EMaligner.schemas.input_stack method)
(EMaligner.schemas.output_stack method)
validate_file() (EMaligner.schemas.output_stack method)
W
write_chunk_to_file() (in module EMaligner.utils)
write_reg_and_tforms() (in module EMaligner.utils)
write_to_new_stack() (in module EMaligner.utils)
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